Assignment Problem Set 3
by Nicki Agron-Olshina



Problem 1

Use the structure factor equation to calculate the F2 (intensity) values for (i) the 200-reflection, and (ii) the 100-reflection for NaCl. Given cell edge, a = 5.638Å.

200-reflection

dhkl = a/Ö (h2+k2+l2)
d200 = 5.683/Ö (22+02+02)
= 5.638/Ö4
= 5.638/2
= 2.819Å

Given Bragg's Law, l = 2dsinq
sinq/l=1/2d
= 1/(2´2.819)
= 1/5.638
= 0.177Å-1

100-reflection

dhkl = a/Ö (h2+k2+l2)
d100 = 5.683/Ö (12+02+02)
= 5.638/Ö1
= 5.638/1
= 5.638Å

Given Bragg's Law, l = 2dsinq
sinq/l = 1/2d
= 1/(2´5.638)
= 1/11.276
= 0.089Å-1

Atomic Scattering factors for Na+ and Cl-. Bold type indicates calculated data.

Reflection100 111200 
sinq/l 0.0890.150.1540.1770.20
¦Na+9.822 9.0358.9898.6878.390
¦Cl-16.46 14.1213.9713.08312.20


Comment: Correct.
5 Marks

Using the Structure Factor Equation, F(S) = S ¦n e2pi(hx+ky+lz)
and the fractional coordinates for the 4 Na+ and 4 Cl- as follows:

Na:0,0,0;0,1/2,1/2:1/2,0,1/2;1/2,1/2,0;
Cl:1/2,0,0;0,1/2,0:0,0,1/2;1/2,1/2,1/2;

(i) Working out the cosine part of F200
S¦n cos{360(hx+ky+lz)}
= 8.69cos{360(2´0 +0´0 +0´0)}
+8.69cos{360(2´0 +0´1/2 +0´1/2)}
+8.69cos{360(2´1/2 +0´0 +0´1/2)}
+8.69cos{360(2´1/2 +0´1/2 +0´0)}
+13.08cos{360(2´1/2 +0´0 +0´0)}
+13.08cos{360(2´0 +0´1/2 +0´0)}
+13.08cos{360(2´0 +0´0 +0´1/2)}
+13.08cos{360(2´1/2 +0´1/2 +0´1/2)}

= 8.69cos0+8.69cos0 +8.69cos360+8.69cos360+13.08cos360 +13.08cos0+13.08cos0 +13.08cos360
= (8.609)4 + (13.08)4
= 87.08 cos part

Working out the sine part of F200
S¦n sin{360(hx+ky+lz)}
= 8.69sin{360(2´0 +0´0 +0´0)}
+8.69sin{360(2´0 +0´1/2 +0´1/2)}
+8.69sin{360(2´1/2 +0´0 +0´1/2)}
+8.69sin{360(2´1/2 +0´1/2 +0´0)}
+13.08sin{360(2´1/2 +0´0 +0´0)}
+13.08sin{360(2´0 +0´1/2 +0´0)}
+13.08sin{360(2´0 +0´0 +0´1/2)}
+13.08sin{360(2´1/2 +0´1/2 +0´1/2)}

= 8.69sin0+8.69sin0 +8.69sin360+8.69sin360+13.08sin360 +13.08sin0+13.08sin0 +13.08sin360
= (0.0)4+(0.0)4
= 0 sin part
Combining cosine and sine parts
F2002= {cosine part}2+ {sine part}2
F2002 = (87.08)2+02 = 7583 units



Comment: Correct.
5 Marks

(ii) Working out the cosine part of F100
S¦n cos{360(hx+ky+lz)}
= 9.82cos{2p (1´0 +0´0 +0´0)}
+9.82cos{2p (1´0 +0´1/2 +0´1/2)}
+9.82cos{2p (1´1/2 +0´0 +0´1/2)}
+9.82cos{2p (1´1/2 +0´1/2 +0´0)}
+16.46cos{2p (1´1/2 +0´0 +0´0)}
+16.46cos{2p (1´0 +0´1/2 +0´0)}
+16.46cos{2p (1´0 +0´0 +0´1/2)}
+16.46cos{2p (1´1/2 +0´1/2 +0´1/2)}

= 9.82cos0+9.82cos0 +9.82cosp+9.82cosp +16.46cosp +16.46cos0+13.08cos0 +16.46cosp
= (9.82)4+(-9.82)4+(13.08)4+(-13.08)4
= 0 cos part

Working out the sine part of F100
S¦n sin{360(hx+ky+lz)}
= 9.82sin{2p (1´0 +0´0 +0´0)}
+9.82sin{2p (1´0 +0´1/2 +0´1/2)}
+9.82sin{2p (1´1/2 +0´0 +0´1/2)}
+9.82sin{2p (1´1/2 +0´1/2 +0´0)}
+16.46sin{2p (1´1/2 +0´0 +0´0)}
+16.46sin{2p (1´0 +0´1/2 +0´0)}
+16.46sin{2p (1´0 +0´0 +0´1/2)}
+ 16.46sin{2p (1´1/2 + 0´1/2 + 0´1/2)}

= 9.82sin0 + 9.82sin0 + 9.82sinp+9.82cosp + 16.46sinp + 16.46sin0+13.08cos0 + 16.46sinp
= (9.82)4 + (-9.82)4 + (13.08)4 + (-13.08)4
= 0 sin part

Combining cosine and sine parts
F1002 = {cosine part}2+ {sine part}2
F1002=02+02 = 0 units

The amplitude of the 200-reflection from NaCl is 7583 times stronger than that from a single electron. The amplitude of the 100-reflection from NaCl is zero because none of the reciprocal lattice points of 100-reflection of NaCl intersect the Ewald Sphere.


Comment: You are correct in determining the 100 intensity as zero. However your explanation is not quite right. We can assume that with all possible orientations available in a powder of NaCl the reciprocal lattice ring (for a powder) would have intersected the Ewald sphere and therefore diffraction is possible on geometric grounds; however the position of the Na's and Cl's in the unit cell conspire to cancel out each other's contribution for this particular case - a full explanation is given in the model answer. ..
3 Marks

Problem 2

Work out the multiplicity allowance factor needed for the 200-reflection of NaCl.
200
-200
2-00
-2-00
20-0
-20-0
2-0-0
-2-0-0
Since -0 is the same as +0 there are only 2 equivalent sets of planes, the 200 and -200. Thus the Multiplicity of the 200-reflection of NaCl is, j200 = 2.


Comment: The logic is correct as far as putting h=2 or h=-2; however being cubic, the other two axes are identical so 020, 0-20, 002, 00-2 are also permissable giving a final multiplicity of 6.
1 Mark

Problem 3

Calculate the Polarisation allowance factor needed for the 200-reflection of NaCl. Given the unit cell edge, a = 5.638Å, and the equation to calculate the d spacing in a cubic cryatal is
dhkl = a/(h2+k2+l2)1/2
d200 = 5.638/(22+02+02)1/2
d200 = 5.638/Ö (22+02+02)
d200 = 5.638/Ö 4
d200 = 5.638/2
d200 = 2.819 Å

Given wavelength for CuKa = 1.54 Å and l = 2dsinq
Then 1.54 = 2(2.819)sinq
1.54 = 5.638sinq
0.273 = sinq
15.85° = q and 31.70° = 2q
Then to calculate P200 given 31.70° = 2q
cos(2q) = 0.850
cos2(2q) = 0.724
and 1 + cos2(2q) = 1.724
P200 = 1+cos2(2q)/2
P200 = 1.724/2
P200 = 0.862
So polarisation produces a reduction in intensity to approximately 86% in the case of the 200-reflection.


Comment: Correct.
4 Marks

Problem 4

Calculate the Lorentz allowance factor for the 200-reflection of NaCl.
Given that Lµ1/sin2q cosq
q = 15.85°
sinq = 0.273
sin2q = 0.0746
cosq = 0.962
sin2qcosq = 0.0718 = 0.072
Lµ1/sin2q cosq = 13.94


Comment: Correct.
3 Marks

Problem 5

Bring together the F2 value and the 3 allowance factors determined above and predict the intensity ratio I111/I200.
Given the formula relating the measured intensity to the structure factor,
Ihkl = cjhklPhklLhklAFhkl2
and the given allowance factors for the 111-reflection of NaCl:
j111 = 8
P111 = 0.894
L111 = 18.39
F1112 = 398
I111 = 52,347 c units
and the following calculated allowance factors for the 200 reflection of NaCl:
j200 = 2
P200 = 0.862
L200 = 13.91
F2002 = 7583
I200 = 181,847 c units

Then I111/I200 = 52,347/181,847 = 0.288


Comment: The method is correct but of course you are carrying a wrong value (2) for the multiplicity (6) so the actual numerical result obtained (0.288) is too large by a factor of 3.
3 Marks

Problem 6

What plausible factors (additional to j,P,L) might be the cause of the discrepancy between the measured ratio I111/I200 and my predicted ratio?

  1. Error in calculations: Even though the measured experimental values are suspect, there is always the possibility (some might say a strong probabiliby) that there is some careless, silly, should have been spotted, type of error in my calculations that resulted in my calculated allowance factors being more than slightly inaccurate. Perfection can only be approached asymptotically, but alas, never reached.
  2. Particle size too coarse: If the particle size of the sample is too coarse some of the crystals might be diffracting intensly on certain reflections and not so intensly on others and this could result in erroneous measured peak intensities.
  3. Preferred orientation of crystallites: This is probably not much concerne with a cubic crystal such as NaCl.
  4. Poor allignment of instrument:
  5. Sample not pure: Ionic substitution can result in changes in peak intensities. Peak overlap from impurity phases in a sample can result in errors is measured peak intensity.
  6. Absorption of water during measurement: NaCl is hygroscopic and could absorb water, if conditions are humid enough, during measurement. This would alter peak intensities as the NaCl changed to a hydrated phase.
  7. Thermal parameters: Na+ and Cl- have large thermal parameters due to their single charge.
  8. Temperature of specimen: Specimen temperature would probably have been at room temperature so this factor is probably not contributing much to peak intensity discrepinsies.
  9. Anisotropic line broadening:
  10. Inadequate time alloted to data collection: Poor counting statistics can result in less than optimal data from which to calculate intensity values.
  11. X-ray tube intensity too low: Low tube intensity results in poor counting statistics and less than optimal data quality.
  12. Malfunction of X-ray detector: If an X-ray detector is not functioning consistantly through out the measurement then the collected data will not reflect true beam intensities.


Comment: I agree particularly with your Nos. 2,3,5,7,12; your No.1 is equivalent to my "human error" (in model answer); No.4 is also valid; No.6 is a nice idea, even if unlikely (see model answer "Environment"), No.8 connects with No.7; No.10 connects with No.11 which is also valid. Altogether you have enough valid causes for:
10 Marks