A powder diffraction pattern is collected on the hydrochloride salt of a
well-known organic substance using
Cu Ka1
radiation
(
[5 Marks]
The positions of 40 reflections were provided. Indexing programs require 20 reflections
to work effectively and so 20 'good' reflections were selected from the 40. The strategy I
adopted was to select strong reflections - irrespective of whether they had low or high angle
'tails'. The rational for this is that 'tails' would have little effect on the central position
of a strong peak, although the presence of tails indicates some underlying problem with the data.
I ignored low intensity reflections (e.g. 7.50, 11.77 & 24.54 2q) and relatively weak reflections that were close to more intense reflections
(e.g. 15.05 2q) - in the latter case the background of the smaller
peak is distorted by the larger peak. I also ignored impurity reflections (e.g. 26.76 2q) and reflections that were so close together
that they could not be resolved (e.g. 30.27 & 30.39 2q) - i.e. the dip between the reflections did
not drop to the general background count.
The above 2q values were typed into the input page
of the zone indexing program. Upon submission of the data, the ten most probable
solutions were displayed. I looked for a solution in which at least 19 of the 20
lines were indexed and with a Figure of Merit >4. The first solution presented
looked good - all 20 lines had been indexed and the Figure of Merit was 7.4.The unit
cell Real-Space parameters were as follows.
a¹
b¹ c
and a =
g = 90° and
b ¹ 90°
Number 2q 1 8.07 2 10.25 3 14.82 4 16.44 5 17.15 6 18.07 7 18.81 8 19.36 9 20.63 10 21.64 11 23.10 12 23.45 13 23.77 14 24.27 15 25.98 16 26.57 17 27.72 18 28.27 19 29.81 20 31.11
Parameter Value a 23.696 Å b 6.193 Å c 22.013 Å a 90° b 97.92° g 90°
Thus, this is the Monoclinic Crystal System.
Comment: Do not be too hasty in rejecting low-angle
weak peaks - higher angle ones yes, but the low-angle ones can often be key
reflections for indexing purposes. In addition, when the figure of merit is low
(e.g. 7.4), you should be more critical in accepting the solution. In
particular, the value of c is out by a factor of 2. It is this
that causes the low F20 value. You should have checked to see whether the
density of reflections looked reasonable.
3 Marks
[5 Marks]
The hkl generating program produced a list of hkl values for the chosen cell parameters. A study
of the data showed that for many of the observed peaks, there were several calculated reflections very near
to them. The information supplied says that the data was obtained from a well aligned diffractometer.
I, therefore, only considered computed reflections that were within 0.06° of the observed reflection.The computed
values can be compared with the observed values in the table below.
The red values are unambiquous since there is only one computed reflection within
0.06° of the observed peak. The data suggests a 0.03°error for the first two reflections (these
suffer from axial divergence) and approx. 0.01°for the rest. Consequently, these error
limits were applied to the values between the red values to obtain a better set of computed values (Blue). This was a fairly difficult process since I tried extrapolate a sensible 2q
error from the unambiquous values to the other values. I tried to air on the side of caution. If in doubt,
I didn't assign.The computed values for some of the reflections still remain ambiguous and as such
all the computed lines for those reflections are left uncoloured (black).
Comment: You generally (with one exception) have
l = 2n here suggesting a doubled c axis.
For the monoclinic crystal system there are two lattice types: primitive (P) and C centred (C).
There are no reflection conditions for P centring and for C centring the reflection condition is
hkl:
h + k = 2n
Reflection numbers 5, 13 and 15 satisfy the 'C centred' reflection condition. Thus the Bravais lattice type is mC.
Number 2q
Computed 1 Computed 2
Computed 3 Computed 4 1 8.07 8.04 8.10 2 10.25 10.28 3 14.82 14.78 14.81 14.86 4 16.44 16.42 16.45 5 17.15 17.13 17.19 6 18.07 18.06 18.12 7 18.81 18.77 18.81 18.85 18.86 8 19.36 19.35 9 20.63 20.63 20.64 10 21.64 21.64 21.64 11 23.10 23.06 23.10 23.15 12 23.45 23.45 13 23.77 23.74 23.74 23.77 14 24.27 24.24 24.27 24.29 15 25.98 26.00 16 26.57 26.56 26.64 17 27.72 27.70 27.73 27.75 18 28.81 29.80 29.82 29.87 19 30.06 30.06 30.07 20 31.11 31.07 31.10
Number 2q
Computed (hkl) 1 8.07 8.10 0 0 2 2 10.25 10.28 -2 0 2 5 17.15 17.13 1 1 2 6 18.12 18.11 4 0 2 8 19.36 19.35 -3 1 2 11 23.10 23.10 -4 1 3 12 23.45 23.45 -3 1 4 13 23.77 23.77 5 1 0 14 24.27 24.27 -5 1 2 15 25.98 26.00 5 1 2
i.e.h + k =even. In addition, reflections where all three hkl indices were even were ingnored
since they provide no symmetry information.
Comment: You need to consider other centred cells
for monoclinic since C is just the standard setting.
See model answer.
Major comment: Reflection 11 in your above list does NOT satisfy the
C-centred condition, so you should deduced a primitive lattice based
on your indexing as is.
3 Marks
Minor comment: Why jump to a new page at this point? I cannot see any advantage in a page break just here.